How to cite the R package cooccur

cooccur is a popular R package that is available at https://cran.r-project.org/web/packages/cooccur/index.html. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the cooccur package have suggested.

Example of an in-text citation

Analysis of the data was done using the cooccur package (v1.3; Griffith et al., 2016).

Reference list entry

Griffith, D. M., Veech, J. A., & Marsh, C. J. (2016). cooccur: Probabilistic Species Co-Occurrence Analysis inR. Journal of Statistical Software, 69(Code Snippet 2). https://doi.org/10.18637/jss.v069.c02

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the cooccur package v1.3 (1).

Reference list entry

1.
Griffith DM, Veech JA, Marsh CJ. cooccur: Probabilistic Species Co-Occurrence Analysis inR. J Stat Softw [Internet]. 2016;69(Code Snippet 2). Available from: http://dx.doi.org/10.18637/jss.v069.c02

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Griffith2016-fq,
  title     = "cooccur: Probabilistic Species {Co-Occurrence} Analysis inR",
  author    = "Griffith, Daniel M and Veech, Joseph A and Marsh, Charles J",
  journal   = "J. Stat. Softw.",
  publisher = "Foundation for Open Access Statistic",
  volume    =  69,
  number    = "Code Snippet 2",
  year      =  2016,
  url       = "http://dx.doi.org/10.18637/jss.v069.c02",
  language  = "en",
  issn      = "1548-7660",
  doi       = "10.18637/jss.v069.c02"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Griffith, Daniel M
AU  - Veech, Joseph A
AU  - Marsh, Charles J
TI  - cooccur: Probabilistic Species Co-Occurrence Analysis inR
T2  - J. Stat. Softw.
VL  - 69
IS  - Code Snippet 2
PY  - 2016
DA  - 2016
PB  - Foundation for Open Access Statistic
SN  - 1548-7660
DO  - 10.18637/jss.v069.c02
UR  - http://dx.doi.org/10.18637/jss.v069.c02
ER  -

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cooccur R package release history

Version	Release date
1.2	2014-11-18
1.1	2014-05-06
1.0	2014-03-09