How to cite the Bioconductor package derfinder

derfinder is a popular Bioconductor package that is available at https://bioconductor.org/packages/derfinder. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the derfinder package have suggested.

Example of an in-text citation

Analysis of the data was done using the derfinder package (v1.24.2; Collado-Torres et al., 2017).

Reference list entry

Collado-Torres, L., Nellore, A., Frazee, A. C., Wilks, C., Love, M. I., Langmead, B., Irizarry, R. A., Leek, J. T., & Jaffe, A. E. (2017). Flexible expressed region analysis for RNA-seq withderfinder. Nucleic Acids Research, 45(2), e9–e9.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the derfinder package v1.24.2 (1).

Reference list entry

1.
Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, et al. Flexible expressed region analysis for RNA-seq withderfinder. Nucleic Acids Res. 2017 Jan 25;45(2):e9–e9.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Collado-Torres2017-gd,
  title     = "Flexible expressed region analysis for {RNA-seq} withderfinder",
  author    = "Collado-Torres, Leonardo and Nellore, Abhinav and Frazee, Alyssa
               C and Wilks, Christopher and Love, Michael I and Langmead, Ben
               and Irizarry, Rafael A and Leek, Jeffrey T and Jaffe, Andrew E",
  journal   = "Nucleic Acids Res.",
  publisher = "Oxford University Press (OUP)",
  volume    =  45,
  number    =  2,
  pages     = "e9--e9",
  month     =  jan,
  year      =  2017,
  url       = "http://dx.doi.org/10.1093/nar/gkw852",
  copyright = "http://creativecommons.org/licenses/by-nc/4.0/",
  language  = "en",
  issn      = "0305-1048, 1362-4962",
  doi       = "10.1093/nar/gkw852"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Collado-Torres, Leonardo
AU  - Nellore, Abhinav
AU  - Frazee, Alyssa C
AU  - Wilks, Christopher
AU  - Love, Michael I
AU  - Langmead, Ben
AU  - Irizarry, Rafael A
AU  - Leek, Jeffrey T
AU  - Jaffe, Andrew E
TI  - Flexible expressed region analysis for RNA-seq withderfinder
T2  - Nucleic Acids Res.
VL  - 45
IS  - 2
SP  - e9-e9
PY  - 2017
DA  - 2017/1/25
PB  - Oxford University Press (OUP)
SN  - 0305-1048
DO  - 10.1093/nar/gkw852
UR  - http://dx.doi.org/10.1093/nar/gkw852
ER  -

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