How to cite the Bioconductor package destiny

destiny is a popular Bioconductor package that is available at https://bioconductor.org/packages/destiny. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the destiny package have suggested.

Example of an in-text citation

Analysis of the data was done using the destiny package (v3.4.0; Angerer et al., 2016).

Reference list entry

Angerer, P., Haghverdi, L., Büttner, M., Theis, F. J., Marr, C., & Buettner, F. (2016). destiny: diffusion maps for large-scale single-cell data in R. Bioinformatics, 32(8), 1241–1243.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the destiny package v3.4.0 (1).

Reference list entry

1.
Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F. destiny: diffusion maps for large-scale single-cell data in R. Bioinformatics. 2016 Apr 15;32(8):1241–3.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Angerer2016-hu,
  title     = "destiny: diffusion maps for large-scale single-cell data in {R}",
  author    = "Angerer, Philipp and Haghverdi, Laleh and B{\"u}ttner, Maren and
               Theis, Fabian J and Marr, Carsten and Buettner, Florian",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  32,
  number    =  8,
  pages     = "1241--1243",
  month     =  apr,
  year      =  2016,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btv715",
  language  = "en",
  issn      = "1367-4803, 1460-2059",
  doi       = "10.1093/bioinformatics/btv715"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Angerer, Philipp
AU  - Haghverdi, Laleh
AU  - Büttner, Maren
AU  - Theis, Fabian J
AU  - Marr, Carsten
AU  - Buettner, Florian
TI  - destiny: diffusion maps for large-scale single-cell data in R
T2  - Bioinformatics
VL  - 32
IS  - 8
SP  - 1241-1243
PY  - 2016
DA  - 2016/4/15
PB  - Oxford University Press (OUP)
SN  - 1367-4803
DO  - 10.1093/bioinformatics/btv715
UR  - http://dx.doi.org/10.1093/bioinformatics/btv715
ER  -

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