How to cite the Bioconductor package gage

gage is a popular Bioconductor package that is available at https://bioconductor.org/packages/gage. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the gage package have suggested.

Example of an in-text citation

Analysis of the data was done using the gage package (v2.40.1; Luo et al., 2009).

Reference list entry

Luo, Weijun, Friedman, Michael, Shedden, Kerby, Hankenson, Kurt, Woolf, & Peter. (2009). GAGE: generally applicable gene set enrichment for pathway analysis. In BMC Bioinformatics (Vol. 10, p. 161).

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the gage package v2.40.1 (1).

Reference list entry

1.
Luo, Weijun, Friedman, Michael, Shedden, Kerby, et al. GAGE: generally applicable gene set enrichment for pathway analysis. Vol. 10, BMC Bioinformatics. 2009. p. 161.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@MISC{Luo2009-dv,
  title   = "{GAGE}: generally applicable gene set enrichment for pathway
             analysis",
  author  = "{Luo} and {Weijun} and {Friedman} and {Michael} and {Shedden} and
             {Kerby} and {Hankenson} and {Kurt} and {Woolf} and {Peter}",
  journal = "BMC Bioinformatics",
  volume  =  10,
  pages   = "161",
  year    =  2009
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - MISC
AU  - Luo
AU  - Weijun
AU  - Friedman
AU  - Michael
AU  - Shedden
AU  - Kerby
AU  - Hankenson
AU  - Kurt
AU  - Woolf
AU  - Peter
TI  - GAGE: generally applicable gene set enrichment for pathway analysis
T2  - BMC Bioinformatics
VL  - 10
SP  - 161
PY  - 2009
DA  - 2009
ER  -

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