How to cite the Bioconductor package girafe

girafe is a popular Bioconductor package that is available at https://bioconductor.org/packages/girafe. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the girafe package have suggested.

Example of an in-text citation

Analysis of the data was done using the girafe package (v1.42.0; Toedling et al., 2010).

Reference list entry

Toedling, J., Ciaudo, C., Voinnet, O., Heard, E., & Barillot, E. (2010). girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. Bioinformatics, 26(22), 2902–2903.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the girafe package v1.42.0 (1).

Reference list entry

1.
Toedling J, Ciaudo C, Voinnet O, Heard E, Barillot E. girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. Bioinformatics. 2010 Nov 15;26(22):2902–3.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Toedling2010-ly,
  title     = "girafe - an {R/Bioconductor} package for functional exploration
               of aligned next-generation sequencing reads",
  author    = "Toedling, J and Ciaudo, C and Voinnet, O and Heard, E and
               Barillot, E",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  26,
  number    =  22,
  pages     = "2902--2903",
  month     =  nov,
  year      =  2010,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btq531",
  language  = "en",
  issn      = "1367-4803, 1460-2059",
  doi       = "10.1093/bioinformatics/btq531"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Toedling, J
AU  - Ciaudo, C
AU  - Voinnet, O
AU  - Heard, E
AU  - Barillot, E
TI  - girafe - an R/Bioconductor package for functional exploration of aligned
      next-generation sequencing reads
T2  - Bioinformatics
VL  - 26
IS  - 22
SP  - 2902-2903
PY  - 2010
DA  - 2010/11/15
PB  - Oxford University Press (OUP)
SN  - 1367-4803
DO  - 10.1093/bioinformatics/btq531
UR  - http://dx.doi.org/10.1093/bioinformatics/btq531
ER  -

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