How to cite the Bioconductor package monocle

monocle is a popular Bioconductor package that is available at https://bioconductor.org/packages/monocle. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the monocle package have suggested.

Example of an in-text citation

Analysis of the data was done using the monocle package (v2.18.0; Trapnell et al., 2014).

Reference list entry

Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., Lennon, N. J., Livak, K. J., Mikkelsen, T. S., & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudo-temporal ordering of single cells. In Nature Biotechnology.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the monocle package v2.18.0 (1).

Reference list entry

1.
Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, et al. The dynamics and regulators of cell fate decisions are revealed by pseudo-temporal ordering of single cells. Nature Biotechnology. 2014.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@MISC{Trapnell2014-wn,
  title   = "The dynamics and regulators of cell fate decisions are revealed by
             pseudo-temporal ordering of single cells",
  author  = "Trapnell, Cole and Cacchiarelli, Davide and Grimsby, Jonna and
             Pokharel, Prapti and Li, Shuqiang and Morse, Michael and Lennon,
             Niall J and Livak, Kenneth J and Mikkelsen, Tarjei S and Rinn,
             John L",
  journal = "Nature Biotechnology",
  year    =  2014
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - MISC
AU  - Trapnell, Cole
AU  - Cacchiarelli, Davide
AU  - Grimsby, Jonna
AU  - Pokharel, Prapti
AU  - Li, Shuqiang
AU  - Morse, Michael
AU  - Lennon, Niall J
AU  - Livak, Kenneth J
AU  - Mikkelsen, Tarjei S
AU  - Rinn, John L
TI  - The dynamics and regulators of cell fate decisions are revealed by
      pseudo-temporal ordering of single cells
T2  - Nature Biotechnology
PY  - 2014
DA  - 2014
ER  -

Other citation styles (ACS, ACM, IEEE, ...)

BibGuru offers more than 8,000 citation styles including popular styles such as AMA, ACN, ACS, CSE, Chicago, IEEE, Harvard, and Turabian, as well as journal and university specific styles! Give it a try now: Start citing now!