How to cite the Bioconductor package oligo

oligo is a popular Bioconductor package that is available at https://bioconductor.org/packages/oligo. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the oligo package have suggested.

Example of an in-text citation

Analysis of the data was done using the oligo package (v1.54.1; Carvalho & Irizarry, 2010).

Reference list entry

Carvalho, B. S., & Irizarry, R. A. (2010). A framework for oligonucleotide microarray preprocessing. Bioinformatics, 26(19), 2363–2367.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the oligo package v1.54.1 (1).

Reference list entry

1.
Carvalho BS, Irizarry RA. A framework for oligonucleotide microarray preprocessing. Bioinformatics. 2010 Oct 1;26(19):2363–7.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Carvalho2010-hx,
  title     = "A framework for oligonucleotide microarray preprocessing",
  author    = "Carvalho, Benilton S and Irizarry, Rafael A",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  26,
  number    =  19,
  pages     = "2363--2367",
  month     =  oct,
  year      =  2010,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btq431",
  language  = "en",
  issn      = "1460-2059, 1367-4803",
  doi       = "10.1093/bioinformatics/btq431"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Carvalho, Benilton S
AU  - Irizarry, Rafael A
TI  - A framework for oligonucleotide microarray preprocessing
T2  - Bioinformatics
VL  - 26
IS  - 19
SP  - 2363-2367
PY  - 2010
DA  - 2010/10/1
PB  - Oxford University Press (OUP)
SN  - 1460-2059
DO  - 10.1093/bioinformatics/btq431
UR  - http://dx.doi.org/10.1093/bioinformatics/btq431
ER  -

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