How to cite the Bioconductor package padma

padma is a popular Bioconductor package that is available at https://bioconductor.org/packages/padma. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the padma package have suggested.

Example of an in-text citation

Analysis of the data was done using the padma package (v1.0.0; Rau et al., 2020).

Reference list entry

Rau, A., Manansala, R., Flister, M. J., Rui, H., Jaffrezic, F., Laloe, D., & Auer, P. L. (2020). Individualized multi-omic pathway deviation scores using multiple factor analysis. In Biostatistics (accepted): Vol. doi: https://doi.org/10.1101/827022.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the padma package v1.0.0 (1).

Reference list entry

1.
Rau A, Manansala R, Flister MJ, Rui H, Jaffrezic F, Laloe D, et al. Individualized multi-omic pathway deviation scores using multiple factor analysis. Vol. doi: https://doi.org/10.1101/827022, Biostatistics (accepted). 2020.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@MISC{Rau2020-aw,
  title   = "Individualized multi-omic pathway deviation scores using multiple
             factor analysis",
  author  = "Rau, Andrea and Manansala, Regina and Flister, Michael J and Rui,
             Hallgeir and Jaffrezic, Florence and Laloe, Denis and Auer, Paul L",
  journal = "Biostatistics (accepted)",
  volume  = "doi: https://doi.org/10.1101/827022",
  year    =  2020
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - MISC
AU  - Rau, Andrea
AU  - Manansala, Regina
AU  - Flister, Michael J
AU  - Rui, Hallgeir
AU  - Jaffrezic, Florence
AU  - Laloe, Denis
AU  - Auer, Paul L
TI  - Individualized multi-omic pathway deviation scores using multiple factor
      analysis
T2  - Biostatistics (accepted)
VL  - doi: https://doi.org/10.1101/827022
PY  - 2020
DA  - 2020
ER  -

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