How to cite the Bioconductor package pathview

pathview is a popular Bioconductor package that is available at https://bioconductor.org/packages/pathview. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the pathview package have suggested.

Example of an in-text citation

Analysis of the data was done using the pathview package (v1.30.1; Luo & Brouwer, 2013).

Reference list entry

Luo, W., & Brouwer, C. (2013). Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics, 29(14), 1830–1831.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the pathview package v1.30.1 (1).

Reference list entry

1.
Luo W, Brouwer C. Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics. 2013 Jul 15;29(14):1830–1.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Luo2013-fq,
  title     = "Pathview: an {R/Bioconductor} package for pathway-based data
               integration and visualization",
  author    = "Luo, Weijun and Brouwer, Cory",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  29,
  number    =  14,
  pages     = "1830--1831",
  month     =  jul,
  year      =  2013,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btt285",
  language  = "en",
  issn      = "1460-2059, 1367-4803",
  doi       = "10.1093/bioinformatics/btt285"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Luo, Weijun
AU  - Brouwer, Cory
TI  - Pathview: an R/Bioconductor package for pathway-based data integration and
      visualization
T2  - Bioinformatics
VL  - 29
IS  - 14
SP  - 1830-1831
PY  - 2013
DA  - 2013/7/15
PB  - Oxford University Press (OUP)
SN  - 1460-2059
DO  - 10.1093/bioinformatics/btt285
UR  - http://dx.doi.org/10.1093/bioinformatics/btt285
ER  -

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