How to cite the Bioconductor package piano

piano is a popular Bioconductor package that is available at https://bioconductor.org/packages/piano. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the piano package have suggested.

Example of an in-text citation

Analysis of the data was done using the piano package (v2.6.0; Väremo et al., 2013).

Reference list entry

Väremo, L., Nielsen, J., & Nookaew, I. (2013). Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Research, 41(8), 4378–4391.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the piano package v2.6.0 (1).

Reference list entry

1.
Väremo L, Nielsen J, Nookaew I. Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. 2013 Apr 1;41(8):4378–91.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Varemo2013-gr,
  title     = "Enriching the gene set analysis of genome-wide data by
               incorporating directionality of gene expression and combining
               statistical hypotheses and methods",
  author    = "V{\"a}remo, Leif and Nielsen, Jens and Nookaew, Intawat",
  journal   = "Nucleic Acids Res.",
  publisher = "Oxford University Press (OUP)",
  volume    =  41,
  number    =  8,
  pages     = "4378--4391",
  month     =  apr,
  year      =  2013,
  url       = "http://dx.doi.org/10.1093/nar/gkt111",
  copyright = "http://creativecommons.org/licenses/by-nc/3.0/",
  language  = "en",
  issn      = "0305-1048, 1362-4962",
  doi       = "10.1093/nar/gkt111"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Väremo, Leif
AU  - Nielsen, Jens
AU  - Nookaew, Intawat
AD  - Department of Chemical and Biological Engineering, Chalmers University of
      Technology, Gothenburg 412 96, Sweden
TI  - Enriching the gene set analysis of genome-wide data by incorporating
      directionality of gene expression and combining statistical hypotheses and
      methods
T2  - Nucleic Acids Res.
VL  - 41
IS  - 8
SP  - 4378-4391
PY  - 2013
DA  - 2013/4/1
PB  - Oxford University Press (OUP)
SN  - 0305-1048
DO  - 10.1093/nar/gkt111
UR  - http://dx.doi.org/10.1093/nar/gkt111
ER  -

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