How to cite the Bioconductor package sesame

sesame is a popular Bioconductor package that is available at https://bioconductor.org/packages/sesame. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the sesame package have suggested.

Example of an in-text citation

Analysis of the data was done using the sesame package (v1.8.2; Zhou et al., 2018).

Reference list entry

Zhou, W., Triche, T. J., Jr, Laird, P. W., & Shen, H. (2018). SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions. Nucleic Acids Research. https://doi.org/10.1093/nar/gky691

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the sesame package v1.8.2 (1).

Reference list entry

1.
Zhou W, Triche TJ Jr, Laird PW, Shen H. SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions. Nucleic Acids Res [Internet]. 2018 Jul 31; Available from: http://dx.doi.org/10.1093/nar/gky691

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Zhou2018-od,
  title     = "{SeSAMe}: reducing artifactual detection of {DNA} methylation by
               Infinium {BeadChips} in genomic deletions",
  author    = "Zhou, Wanding and Triche, Jr, Timothy J and Laird, Peter W and
               Shen, Hui",
  journal   = "Nucleic Acids Res.",
  publisher = "Oxford University Press (OUP)",
  month     =  jul,
  year      =  2018,
  url       = "http://dx.doi.org/10.1093/nar/gky691",
  copyright = "http://creativecommons.org/licenses/by-nc/4.0/",
  language  = "en",
  issn      = "0305-1048, 1362-4962",
  doi       = "10.1093/nar/gky691"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Zhou, Wanding
AU  - Triche, Timothy J, Jr
AU  - Laird, Peter W
AU  - Shen, Hui
AD  - Center for Epigenetics, Van Andel Research Institute, 333 Bostwick Ave.,
      N.E., Grand Rapids, MI 49503 USA
TI  - SeSAMe: reducing artifactual detection of DNA methylation by Infinium
      BeadChips in genomic deletions
T2  - Nucleic Acids Res.
PY  - 2018
DA  - 2018/7/31
PB  - Oxford University Press (OUP)
SN  - 0305-1048
DO  - 10.1093/nar/gky691
UR  - http://dx.doi.org/10.1093/nar/gky691
ER  -

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